Choose a topic:





Vollmers C, Sit RV, Weinstein JA, Dekker CL, Quake SR. Genetic measurement of memory B-cell recall using antibody repertoire sequencing. Proc Natl Acad Sci USA. 2013 Aug 13; 110(33):13463-8. doi: 10.1073/pnas. 1312146110. Epub 2013 Jul 29. PMID: 23898164


Voskoboynik A, Newman AM, Corey DM, Sahoo D, Pushkarev D, Neff NF, Passarelli B, Koh W, Ishizuka KJ, Palmeri KJ, Dimov IK, Keasar C, Fan HC, Mantalas GL, Sinha R, Penland L, Quake SR, Weissman IL. Identification of a colonial chordate histocompatibility gene. Science. 2013 Jul 26; 341 (6144); 384-7. doi: 10.1126/science. 1238036. PMID: 23888037

Voskoboynik A, Neff NF, Sahoo D, Newman AM, Pushkarev D, Koh W, Passarelli B, Fan HC, Mantalas GL, Palmeri KJ, Ishizuka KJ, Gissi C, Griggio F, Ben-Shlomo R, Corey DM, Penland L, White RA, Weissman IL, Quake SR. The genome sequence of the colonial chordate, Botryllus schlosseri. Elife. 2013 Jul 2; 2:e00569. doi: 10.7554/eLife. 00569. Print 2013. PMID: 23840927

Weinstein JA, Zeng X, Chien YH, Quake SR. "Correlation of gene expression and genome mutation in single B-cells." PLoS One. 2013 June 28; 8 (6):e67624. doi: 10.1371/journal.pone.0067624. Print 2013. PMID: 23840752

Dodsworth JA, Blainey PC, Murugapiran SK, Swingley WD, Ross CA, Tringe SG, Chain PS, Scholz MB, Lo CC, Raymond J, Quake SR, Hedlund BP. Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage.Nat Commun. 2013; 4:1854. doi: 10.1038/ncomms2884. PMID: 23673639
Yu F, Horowitz MA, Quake SR. "Microfluidic serial digital to analog pressure converter for arbitrary pressure generation and contamination-free flow control" Lab Chip. 2013 Mar 25. [Epub ahead of print]
PMID: 23529280
Jiang N, He J, Weinstein JA, Penland L, Sasaki S, He XS, Dekker CL, Zheng NY, Huang M, Sullivan M, Wilson PC, Greenberg HB, Davis MM, Fisher DS, Quake SR. "Lineage structure of the human antibody repertoire in response to influenza vaccination" Sci Transl Med. 2013 Feb 6;5(171):171ra19. doi: 10.1126/scitranslmed.3004794.
PMID: 23390249
Streets AM, Sourigues Y, Kopito RR, Melki R, Quake SR. "Simultaneous measurement of amyloid fibril formation by dynamic light scattering and fluorescence reveals complex aggregation kinetics" PLoS One. 2013;8(1):e54541. doi: 10.1371/journal.pone.0054541. Epub 2013 Jan 17.
PMID: 23349924
Meier M, Sit RV, Quake SR. "Proteome-wide protein interaction measurements of bacterial proteins of unknown function" Proc Natl Acad Sci U S A. 2013 Jan 8;110(2):477-82. doi: 10.1073/pnas.1210634110. Epub 2012 Dec 24.
PMID: 23267104
Vedel S, Tay S, Johnston DM, Bruus H, Quake SR. "Migration of cells in a social context."Proc Natl Acad Sci U S A. 2013 Jan 2;110(1):129-34. doi: 10.1073/pnas.1204291110. Epub 2012 Dec 18.
PMID: 23251032
Martin, Lance; Meier, Matthias; Lyons, Shawn M.; et al. "Systematic reconstruction of RNA functional motifs with high-throughput microfluidics" NATURE METHODS Volume:9 Issue:12 Pages:1192-U85 DOI: 10.1038/NMETH.2225 Published: Dec 2012.
Marshall, Ian P. G.; Blainey, Paul C.; Spormann, Alfred M.; et al. "A Single-Cell Genome for Thiovulum sp." APPLIED AND ENVIRONMENTAL MICROBIOLOGY Volume:78 Issue:24 Pages:8555-8563 DOI: 10.1128/AEM.02314-12 Published: Dec 2012.
Meier, Matthias; Sit, Rene; Pan, Wenying; et al. "High-Performance Binary Protein Interaction Screening in a Microfluidic Format" ANALYTICAL CHEMISTRY Volume:84 Issue:21 Pages: 9572-9578 DOI: 10.1021/ac302436y Published: Nov 6, 2012.
Blainey, Paul C.; Milla, Carlos E.; Cornfield, David N.; et al. "Quantitative Analysis of the Human Airway Microbial Ecology Reveals a Pervasive Signature for Cystic Fibrosis" SCIENCE TRANSLATIONAL MEDICINE Volume:4 Issue:153 DOI: 10.1126/scitranslmed.3004458 Published: Sept 26, 2012.
Jan, Max; Snyder, Thomas M.; Corces-Zimmerman, M. Ryan; et al. "Clonal Evolution of Preleukemic Hematopoietic Stem Cells Precedes Human Acute Myeloid Leukemia" SCIENCE TRANSLATIONAL MEDICINE Volume:4 Issue:149 Article Number: 149ra118 DOI: 10.1126/scitranslmed.3004315 Published: August 29, 2012.
Wang, Jianbin; Fan, H. Christina; Behr, Barry; et al. "Genome-wide Single-Cell Analysis of Recombination Activity and De Novo Mutation Rates in Human Sperm" CELL Volume: 150 Issue: 2 Pages: 402-412 DOI: 10.1016/j.cell.2012.06.030 Published: July 20, 2012.

Fan, H. Christina; Gu, Wei; Wang, Jianbin; et al. "Non-invasive prenatal measurement of the fetal genome" NATURE Volume: 487 Issue: 7407 Pages: 320-+ DOI: 10.1038/nature11251 Published: July 19, 2012.

Pamp, Suenje J.; Harrington, Eoghan D.; Quake, Stephen R.; et al. "Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB)" GENOME RESEARCH Volume: 22 Issue: 6 Pages: 1107-1119 DOI: 10.1101/gr.131482.111 Published: June 2012.
Powell, Ashley A.; Talasaz, AmirAli H.; Zhang, Haiyu; et al. "Single Cell Profiling of Circulating Tumor Cells: Transcriptional Heterogeneity and Diversity from Breast Cancer Cell Lines" PLOS ONE, Volume: 7 Issue:5 Article Number: e33788 DOI: 10.1371/journal.pone.0033788 Published: May 7, 2012.

Rothenberg, Michael E.; Nusse, Ysbrand; Kalisky, Tomer; et al. "Identification of a cKit(+) Colonic Crypt Base Secretory Cell That Supports Lgr5(+) Stem Cells in Mice" Gastroenterology, Volume:142 Issue:5 Pages:1195-+ DOI:10.1053/j.gastro.2012.02.006 Published: May 2012.


Sanchez-Freire, Veronica; Ebert, Antje D.; Kalisky, Tomer; et al. "Microfluidic single-cell real-time PCR for comparative analysis of gene expression patterns" Nature Protocols Volume:7 Issue:5 Pages:829-838 DOI:10.1038/nprot.2012.021 Published: April 2012.

Dewey, Frederick E., Pan, Stephen; Wheeler, Matthew T.; et al. "DNA Sequencing Clinical Applications of New DNA Sequencing Technologies" Circulation, Volume:125 Issue:7 Pages:931-944 DOI:10.1161/CIRCULATIONAHA.110.972828 Published Feb 21, 2012.
Araci, Ismail Emre; Quake, Stephen R. "Microfluidic very lage scale integration (mVLSI) with integrated micromechnical valves" Lab on a Chip, Volume:12 Issue:16 Pages:2803-2806 DOI:10.1029/c21c40258k Published:2012.
White, Richard Allen, III; Quake, Stephen R.; Curr, Kenneth. "Digital PCR provides absolute quantitation of viral load for an occult RNA virus" Journal of Virological Methods, Volume:179 Issue:1 Pages:45-50 DOI:10.1016/j.jviromet.2011.09.017 Published Jan 2012.pdf

Wang J, Fan CH, Behr B, Quake SR. "Genome-wide Single-Cell Analysis of Recombination Activity and De Novo Mutation Rates in Human Sperm" Cell, 20 July 2012; 150(402-412). pdfpdf
Fan CH, Gu W, Wang J, Blumenfeld YJ, El0Sayed YY, Quake SR. "Non-invasive prenatal measurement of the fetal genome" Nature, 19 July 2012; 487(320-324). DOI:10.1038/nature11251.pdfpdf
Wu AR, Kawahara TLA, Rapicavoli NA, van Riggelen J, Shroff EH, Xu L, Felsher DW, Chang HY, Quake SR. "High throughput automated chromatin immunoprecipitation as a platform for drug screening and antibody validation" Lab on a Chip, 19 March 2012; 12(2190-2198). DOI:10.1039/c21c21290k.pdfpdf
Dalerba P, Kalisky T, Sahoo D, Rajendran PS, Rothenberg ME, Leyrat AA, Sim S, Okamoto J, Johnston DM, Qian D, Zabala M, Bueno J, Neff NF, Wang J, Shelton AA, Visser B, Hisamori S, Shimono Y, van de Wetering M, Clevers H, Clarke MF, Quake SR. "Single-cell dissection of transcriptional heterogeneity in human colon tumors" Nat Biotechnol. 2011;  29 (12):  1120-7. pdfpdf

Kalisky T, Blainey P, Quake S, "Genomic Analysis at the Single-Cell Level" Annu.Rev.Genet., 2011 45: 431-45pdfpdf

White RA, Quake SR, Curr K, "Digital PCR provides absolute quantitation of viral load for an occult RNA virus" J Virol Methods, 2011 Sep 29.pdfpdf

Xu X, Nagarajan H, Lewis NE, Pan S, Cai Z, Liu X, Chen W, Xie M, Wang W, Hammond S, Andersen MR, Neff N, Passarelli B, Koh W, Fan, HC, Wang J, Gui Y, Lee KH, Betenbaugh MJ, Quake, SR, Famili I, Palsson BO, Wang J., "The Genomic Sequence of the Chinese Hamster Ovary (CHO)-K1 Cell Line" Nat Biotechnology, 2011; 29(8).pdfpdf

Glotzbach JP, Januszyk M, Vial IN, Wong VW, Gelbard A, Kalisky T, Thangarajah H, Longaker MT, Quake SR, Chu G, Gurtner GC., "An Information Theoretic, Microfluidic-Based Single Cell Analysis Permits Identification of Subpopulations among Putatively Homogeneous Stem Cells" PLOS One, 2011; 6(6).pdfpdf

Kawahara TL, Rapicavoli NA, Wu AR, Qu K, Quake SR, Chang HY. "Dynamic Chromatin Localization of Sirt6 Shapes Stress - and aging - related Transcriptional Networks" PLoS Genet, June 2011, 7(6). pdfpdf

Kalisky T, Quake SR."Single-cell Genomics" Nat. Methods, 2011 Apr;8(4). pdfpdf

Snyder TM, Khush KK, Calantine HA, Quake SR."Universal Noninvasive Detection of Solid Organ Transplant Rejection" Pro Natl Acad Sci USA, 2011 Apr 12;108(15). pdfpdf

Jiang N, Weinstein JA, Penland L, White III RA, Fisher DS, Quake SR. "Determinism and stochasticity during maturation of the zebrafish antibody repertoire" Proc Natl Acad Sci USA. March 29, 2011, 108(13) 5348-5353. pdfpdf

Kim S, Streets AM, Lin RR, Quake SR, Weiss S, Majumdar DS. "High-Throughput Single Molecule Optofluidic Analysis" Nature Methods, March 2011 8:3, 242-245 pdfpdf

Blainey PC, Mosier AC, Potanina A, Franics CA, Quake SR. "Genome of a Low-Salinity Ammonia-Oxidizing Archaeon
Determined by Single-Cell and Metagenomic Analysis" 6(2): e16626. 2011 pdfpdf

Fan HC, Wang J, Potanina A, Quake SR. "Whole Genome Molecular Haplotyping of Single Cells" Nature Biotechnology. 2010 Epub Dec 19pdfpdf

Blainey PC, Quake SR. "Digital MDA for enumeration of total nucleic acid contamination" Nucleic Acids Research Advance Access. 2010 Nov;1-9.pdfpdf
Bao XR, Fraser IDC, Wall EA, Quake SR, Simon MI "Variability in G-Protein-Coupled Signaling Studied with Microfluidic
Devices" Biophysical Journal Volume 99 October 2010 2414–2422.pdfpdf
Gomez-Sjoberg R, Leyrat AA, Houseman BT, Shokat K, Quake SR. "Niocompatibility and Reduced Drug Absorption of Sol-Gel-Treated Poly(dimethyl siloxane) for Microfluidic Cell Culture Applications" Ana Chem., 2010 Oct 11 pdfpdf
Fordyce PM, Gerber D, Tran D, Zheng J, Li H5, DeRisi JL, Quake SR. "De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis"Nature Biotechnology. 2010 Sep ;28(9):970-976. Epub 2010 Aug 29.pdfpdf
Tay S, Hughey JJ, Lee TK, Lipniacki T, Quake SR, Covert MW. "Single-cell NF-kappaB dynamics reveal digital activation and analogue information processing."Nature. 2010 Jul 8;466(7303):267-71. Epub 2010 Jun 27.pdfpdf
Fan HC, Blumenfeld YJ, Chitkara U, Hudgins L, Quake SR. "Analysis of the size distributions of fetal and maternal cell-free DNA by paired-end sequencing." Clin Chem. 2010 Aug;56(8):1279-86. Epub 2010 Jun 17.pdfpdf
Ashley EA, Butte AJ, Wheeler MT, Chen R, Klein TE, Dewey FE, Dudley JT, Ormond KE, Pavlovic A, Morgan AA, Pushkarev D, Neff NF, Hudgins L, Gong L, Hodges LM, Berlin DS, Thorn CF, Sangkuhl K, Herbert JM, Woon M, Sagreiya H, Whaley R, Knowles JW, Chou MF, Thakuria JV, Rosenbaum AM, Zaranek AW, Church GM, Greely HT, Quake SR, Altman RB."Clinical Assessment Incorporating a Personal Genome" Lancet 2010 May 1;375(9725). pdfpdf
Streets AM, Quake SR "Ostwald ripening of clusters during protein crystallization" Physical Reveiw Letters. 2010 April 104;178102. pdfpdf
Ashley EA, Butte AJ, Wheeler MT, Chen R, Klein TE, Dewey FE, Dudley JT, Ormond KE, Pavlovic A, Morgan AA, Pushkarev D, Neff NF, Hudgins L, Gong L, Hodges LM, Berlin DS, Thorn CF, Sangkuhl K, Hebert JM, Woon M, Sagreiya H, Whaley R, Knowles JW, Chou MF, Thakuria JV, Rosenbaum AM, Zaranek AW, Church GM, Greely HT, Quake SR, Altman RB " Clinical assessment incorportating a personal genome" Lancet 2010: 375 (9725) 1525:1535pdf
Fan HC, Quake SR "Sensitivity of Noninvasive Prenatal Detection of Fetal Aneuploidy from Maternal Plasma Using Shotgun Sequencing is Limited Only by Counting Statistics" PLOS ONE 5 (5)pdf
Lee CC, Snyder TM, Quake SR."A microfluidic oligonucleotide synthesizer."Nucleic Acids Res. 2010 May;38(8):2514-21. Epub 2010 Feb 21.pdf
Schwartz JJ, Stavrakis S, Quake SR.."Colloidal lenses allow high-temperature single-molecule imaging and improve fluorophore photostability."Nat Nanotechnol. 2010 Feb;5(2):127-32. Epub 2009 Dec 20.pdf
Bates SR, Quake SR "Highly parallel measurements of interaction kinetic constants with a microfabricated optomechanical device" Applied Physics Letters 95 August 2009: 073705pdf
Schwartz JJ, Quake SR"Single molecule measurement of the "speed limit" of DNA polymerase."Proc Natl Acad Sci U S A. 2009 Dec 1;106(48):20294-9. Epub 2009 Nov 11. Erratum in: Proc Natl Acad Sci U S A. 2010 Jan 19;107(3):1254. pdf
Maerkl SJ, Quake SR."Experimental determination of the evolvability of a transcription factor."Proc Natl Acad Sci U S A. 2009 Nov 3;106(44):18650-5. Epub 2009 Oct 19. pdf
Pushkarev D, Neff NF, Quake SR.."Single-molecule sequencing of an individual human genome."Nat Biotechnol. 2009 Sep;27(9):847-52. Epub 2009 Aug 10. pdf
Weinstein JA, Jian N, White III RA, Fisher DS, Quake SR "High-Throughput Sequencing of the Zebrafish Antibody Repertoire" Science 8 May 2009: 807-810 pdf
Wu AR, Hiatt JB, Lu R, Attema JL, Lobo NA, Weissman IL, Clarke MF, Quake SR "Automated microfluidic chromatin immunoprecipitation from 2,000 cells" Lab on a Chip 9, 1365-1370, 2009 pdf
Fan HC, Blumenfeld YJ, El-Sayed YY, Chueh J, Quake SR "Microfluidic digital PCR enables rapid prenatal diagnosis of fetal aneuploidy."Am J Obstet Gynecol. 2009 May;200(5):543.e1-7. pdf
Melin J, Lee A, Foygel K, Leong DE, Quake SR, Yao MWM "In Vitro Embryo Culture in Defined, Sub-microliter Volumes" Dev. Dynamics. 238:950-955, 2009 pdf
White III RA, Blainey PC, Fan CH, Quake SR. "Digital PCR provides sensitive and absolute calibration for high throughput sequencing" BMC Genomics 10:116 doi:10.1186/1471-2164-10-116 pdf
Diehn M, Cho RW, Lobo NA, Kalisky T, Dorie MJ, Kulp AN, Qian D, Lam JS, Ailles LE, Wong M, Joshua B, Kaplan MJ, Wapnir I, Dirbas F, Somlo G, Garberoglio C, Paz B, Shen J, Lau SK, Quake SR, Brown JM, Weissman IL, Clarke MF "Association of reactive oxygen species levels and radioresistance in cancer stem cells" Nature Feb 2009 doi:10.1038/nature07733 pdf
Gerber D, Maerkl SJ, Quake SR. "An in vitro microfluidic approach to generating protein-interaction networks" Nature Methods 6:1 Jan 2009 10.1038/NMET.1289 pdf
Fan CH, Blumenfeld YJ, Chitkara U, Hudgins L, Quake SR. "Noninvasive diagnosis of fetal aneuploidy by shotgun sequencing DNA from maternal blood " Proc. Nat. Acad. Sci. 10.1073/pnas.0808319105 pdf
Einav S, Gerber D, Bryson PD, Sklan EH, Elazar M, Maerkl SJ, Glenn JS, Quake SR. "Discovery of a hepatitis C target and its pharmacological inhibitors by microfluidic affinity analysis" Nature Biotech. 26:9, 1019-1027pdf
Balagadde FK, Song H, Collins CH, Barnet M, Arnold FH, Quake SR, You L. "A synthetic Escherichia coli predator-prey ecosystem" Mol. Sys. Biol. 4:187, 1-8 pdf
Harris TD, Buzby PR, Babcock H, Beer E, Bowers J, Braslavsky I, Causey M, Colonell J, DiMeo J, Efcavitch JW, Giladi E, Gill J, Healy J, Jarosz M, Lapen D, Moulton K, Quake SR, Steinmann K, Thayer E, Tyurina A, Ward R, Weiss H, Xie Z. "Single-Molecule DNA Sequencing of a Viral Genome" Science. 4 April 2008 Vol. 320 pdf
Zhong JF, Chen Y, Marcus JS, Scherer A, Quake SR, Taylor CR, Weiner LP. "A microfluidic processor for gene expression profiling of single human embryonic stem cells" Lab on a Chip. 8, 68-74 pdf
Warren LA, Rossi DJ, Schiebinger GR, Weissman IL, Kim SK, Quake SR. "Transcriptional instability is not a universal attribute of aging" Aging Cell. 6:6 775-782 pdf
Gomez-Sjoberg R, Leyrat AA, Pirone DM, Chen CS, Quake SR. "Versatile, Fully Automated, Microfluidic Cell Culture System" Anal. Chem. 10.1021/ac071311w pdf
Marcy Y, Oshoey T, Lasken RS, Stockwell TB, Walenz BP, Halpern AL, Beeson KY, Goldberg SMD, Quake SR. "Nanoliter reactors improve multiple displacement amplification of genomes from single cells" PLoS Genet 3(9): e155. doi:10.1371/journal.pgen.0030155 pdf
Fan HC , Quake SR. "Detection of aneuploidy with digital polymerase chain reaction" Anal. Chem. 10.1021/ac0709394 pdf
Schwartz JJ, Quake SR. "High density single molecule surface patterning with colloidal epitaxy" Appl. Phys. Lett. 91, 083902 2007 pdf
Spletter ML, Liu J, Liu J, Su H, Giniger E, Komiyama T, Quake SR, Luo L. "Lola regulates Drosophila olfactory projection meuron identity and targeting specificity" Neural. Develop. 2:14 2007 pdf
Marcy Y, Ouverney C, Blik EM, Losekann T, Ivanova N, Martin HG, Szeto E, Platt D, Hugenholtz P, Relman DA, Quake SR. "Dissecting biological "dark matter" with single cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth" Proc. Nat. Acad. Sci. July 9, 2007, 10.1073/pnas.0704662104 pdf
Kartalov EP, Scherer A, Quake SR, Taylor CR, Anderson WF. "Experimentally validated quantitative linear model for the device physics of elastomeric microfluidic valves" J. Appl. Phys. 101 (6) Mar 15 2007 pdf
Anderson MJ, DeLaBarre B, Raghunathan A, Palsson BO, Brunger AT, Quake SR. "Crystal Structure of a Hyperactive Escherichia coli Gylcerol Kinase Mutand Gly230Asp Obtained Using Microfluidic Crystallization Devices" Biochemistry 2007, 46, 5277-5731. pdf
Melin J, Quake SR. "Microfluidic Large-Scale Integration: The Evolution of Design Rules for Biological Automation" Annu. Rev. Biophys. Biomol. Struct. 36:213-31 pdf
Warren LA, Weinstein JA, Quake SR. "The Digital Array Response Curve" Preprint. pdf
Huang Y, Castrataro P, Lee CC, Quake SR. "Solvent resistant microfluidic DNA synthesizer" Lab on a Chip. 2007, 7, 1 DOI: 10.1039/b613923j pdf
Maerkl SJ, Quake SR. "A Systems Approach to Measuring the Binding Energy Landscapes of Transcription Factors" Science. 12 January 2007, 315:233-237 pdf
Ma Z, Gerton JM, Wade LA, Quake SR. "Fluorescence Near-Field Microscopy of DNA at Sub-10nm Resolution" Phys. Rev. Lett. 31 December 2006 97:26 (260801) pdf
Ottesen EA, Hong JW, Quake SR, Leadbetter JR. "Microfluidic Digital PCR Enables Multigene Analysis of Individual Environmental Bacteria" Science. 1 December 2006, 314:1464-67 pdf
Warren L, Bryder D, Weissman IL, Quake SR. "Transcription factor profiling in individual hematopoietic progenitors by digital RT-PCR" Proc. Nat. Acad. Sci. 2006 10.1073/pnas.0608512103 pdf
Anderson MJ, Hansen CL, Quake SR. "Phase knowledge enables rational screens for protein crystallization " Proc. Nat. Acad. Sci. 2006 103: 16746-16751 pdf
Psaltis D, Quake SR, Yang CH. "Developing optofluidic technology through the fusion of microfluidics and optics" Nature 442 (7101): 381-386 pdf
Hong JW, Chen Y, Anderson WF, Quake SR. "Molecular Biology on a Microfluidic Chip" J. Cond. Matt. Phys . 2006 18 (18):S691-S701 May 10 2006 pdf
Phillips R, Quake SR. "The Biological Frontier of Physics" Physics Today 2006 59 (5): 38-43 May 2006 pdf
Liu J, Williams BA, Gwirtz RM, Wolf BJ, Quake SR. "Enhanced Signals and Fast Nucleic Acid Hybridization By Microfluidic Chaotic Mixing " Angew. Chem. 2006 45:3618-3623 pdf
Gambin Y, Legrand O, Quake SR. "Microfabricated rubber microscope using soft solid immersion lenses" Appl. Phys. Lett. 88 (17) Art. No. 174102 pdf
Marcus JS, Anderson WF, Quake SR. "Microfluidic Single-Cell mRNA Isolation and Analysis" Anal. Chem. 2006 Mar 31;10.1021/ac0518506. pdf
Hansen CL, Classen S, Berger JM, Quake SR. "A microfluidic device for kinetic optimization of protein crystallization and in situ structure determination" J. Am. Chem. Soc. 2006 Mar 15;128(10):3142-3. pdf
Polin M, Grier DG, Quake SR. "Anomalous Vibrational Dispersion in Holographically Trapped Colloidal Arrays" Phys. Rev. Lett. 2006 Mar 3;96(8):088101 pdf
Marcus JS, Anderson WF, Quake SR. " Parallel Picoliter rt-PCR Assays Using Microfluidics." Anal. Chem. 2006 Feb 1;78(3):956-8. pdf
Kartalov EP, Zhong JF, Scherer A, Quake SR, Taylor CR, Anderson WF. " High-throughput multi-antigen microfluidic fluorescence immunoassays" Biotechniques. 2006 Jan;40(1):85-90. pdf
Lacenere CJ, Garg NK, Stoltz BM, Quake SR. "Effects of a Modified Dye-Labeled Nucleotide Spacer Arm on Incorporation Thermophilic DNA Polymerases" Nucleosides, Nucleotides & Nucleic Acids. 25:9-15, 2006. pdf
Lee CC, Sui G, Elizarov A, Shu CJ, Shin YS, Dooley AN, Huang J, Daridon A, Wyatt P, Stout D, Kolb HC, Witte ON, Satyamurthy N, Heath JR, Phelps ME, Quake SR, Tseng HR. "Multistep Synthesis of a Radiolabeled Imaging Probe Using Integrated Microfluidics" Science. 16 December 2005: 1793-1796. pdf
Squires TM, Quake SR. "Microfluidics: Fluid physics at the nanoliter scale" Rev. Mod. Phys. July 2005, 7:3 pp. 977-1026. pdf
Adams ML, Johnston ML, Scherer A, Quake SR. "Polydimethylsiloxane based microfluidic diode" J. MicroMech. MicroEng. June 2005 15: 1517-1521 pdf
Garg NK, Woodroofe CC, Lacenere CJ, Quake SR, Stoltz BM. "A ligand-free solid-supported system for Sonogashira couplings: applications in nucleoside chemistry" Chemical Communications. 2005, (36), 4551-4553. pdf
Balagadde FK, You L, Hansen CL, Arnold FH, Quake SR. "Long-term monitoring of bacteria undergoing programmed population control in a microchemostat." Science. 2005 Jul 1;309(5731):137-40. pdf
Gerton JM, Wade LA, Lessard GA, Ma Z, Quake SR. "Tip-enhanced fluorescence microscopy at 10 nanometer resolution." Phys Rev Lett. 2004 Oct 29;93(18):180801. pdf
Hansen CL, Sommer MO, Quake SR. "Systematic investigation of protein phase behavior with a microfluidic formulator." Proc. Natl. Acad. Sci . 2004 Oct 5;101(40):14431-6. pdf
Kartalov EP, Quake SR. "Microfluidic device reads up to four consecutive base pairs in DNA sequencing-by-synthesis." Nucleic Acids Res. 2004 May 20;32(9):2873-9. pdf
Hong JW, Studer V, Hang G, Anderson WF, Quake SR. "A nanoliter-scale nucleic acid processor with parallel architecture" Nat Biotechnol. 2004 Apr;22(4):435-9. pdf
Vyawahare, S. Eyal, S. Mathews, K. D. Quake, S. R. " Nanometer-scale Fluorescence Resonance Optical Waveguides" Nano Lett.; (Comm.); 2004; 4 (6); 1035-1039. pdf
Groisman A, Quake SR. "A microfluidic rectifier: anisotropic flow resistance at low Reynolds numbers." Phys Rev Lett. 2004 Mar 5;92(9):094501. pdf
Rolland JP, Van Dam RM, Schorzman DA, Quake SR, DeSimone JM. "Solvent-resistant photocurable liquid fluoropolymers for microfluidic device fabrication" J. Am. Chem. Soc. 2004 Mar 3;126(8):2322-3. pdf
Wade, LA, Shaprio IR, Ma Z, Quake SR, Collier PC. "Correlating AFM Probe Morphology to Image Resolution for Single-Wall Carbon Nanotube Tips" Nano Lett.; 2004; 4 (4); 725-731 pdf
Studer V, Hang G, Pandolfi A, Ortiz M, Anderson WF, Quake SR. "Scaling properties of a low-actuation pressure microfluidic valve" J. Appl. Phys.; 95 (1) 393-398 pdf
Bao XR, Lee HJ, Quake SR. "Behavior of complex knots in single DNA molecules." Phys Rev Lett. 2003 Dec 31;91(26 Pt 1):265506. pdf
Hong JW, Quake SR. "Integrated nanoliter systems." Nat Biotechnol. 2003 Oct;21(10):1179-83. Review. pdf
Hansen C, Quake SR. "Microfluidics in structural biology: smaller, faster ... better." Curr Opin Struct Biol. 2003 Oct;13(5):538-44. Review. pdf
Reese MO, van Dam RM, Scherer A, Quake SR. "Microfabricated fountain pens for high-density DNA arrays." Genome Res. 2003 Oct;13(10):2348-52. pdf
Liu J, Hansen C, Quake SR. "Solving the "world-to-chip" interface problem with a microfluidic matrix." Anal Chem. 2003 Sep 15;75(18):4718-23. pdf
Yi GR, Jeon SJ, Thorsen T, Manoharan VN, Quake SR, Pine DJ, Yang SM. "Generation of uniform photonic balls by template-assisted colloidal crystallization" Synth. Mat. 139 (3) 803-806 pdf
Yi GR, Thorsen T, Manoharan VN, Hwang MJ, Jeon SJ, Pine DJ, Quake SR, Yang SM. "Generation of uniform colloidal assemblies in soft microfluidic devices" Adv. Mat. 2003 15 (15) 1300+ pdf
Groisman A, Enzelberger M, Quake SR. "Microfluidic memory and control devices" Science. 2003 May 9;300(5621):955-8. pdf
Wade LA, Shapiro I, Ma Z, Quake SR, Collier CP. "Single Molecule Fluorescence and Force Microscopy Employing Carbon Nanotubes" Nanotech 2003 Vol. 3 317-320 pdf
Braslavsky I, Hebert B, Kartalov E, Quake SR, "Sequence Information can be obtained from Single DNA Molecules", Proc. Nat'l Acad. Sci. 100: 3960-3964 (2003). pdf
Kartalov EP, Unger MA, Quake SR. "Polyelectrolyte surface interface for single-molecule fluorescence studies of DNA polymerase." Biotechniques. 2003 Mar;34(3):505-10.pdf
Adams, ML, Enzelberger M, Quake SR, Scherer A. "Microfluidic integration on detector arrays for absorption and fluorescence micro-spectrometers" Sens. and Act. A. 104 (1):25-31 pdf
Filippova EM, Monteleone DC, Trunk JG, Sutherland BM, Quake SR, Sutherland JC. "Quantifying double-strand breaks and clustered damages in DNA by single-molecule laser fluorescence sizing." Biophys. J. 2003 Feb;84(2 Pt 1):1281-90. pdf
Chiu CS, Jensen K, Sokolova I, Wang D, Li M, Deshpande P, Davidson N, Mody I, Quick MW, Quake SR, and Lester HA. "Number, density, and surface/cytoplasmic distribution of GABA transporters at presynaptic structures of knock-in mice carrying GABA transporter subtype 1-green fluorescent protein fusions." J Neurosci. 2002 Dec 1; 22 (23): 10251-66. pdf
Hansen CL, Skordalakes E, Berger JM, Quake SR, "A Robust and Scalable Microfluidic Metering Method that Allows Protein Crystal Growth by Free Interface Diffusion", Proc. Nat'l Acad. Sci. 99: 16531-6 (2002). pdf
Thorsen T, Maerkl SJ, Quake SR, "Microfluidic Large Scale Integration", Science 298: 580-584 (2002). pdf
Brody JP, Williams BA, Wold BJ, Quake SR, "Significance and Statistical Errors in the Analysis of DNA Microarray Data", Proc. Nat'l Acad. Sci. 99: 12975-12978 (2002). pdf
Thompson HGR, Harris JW, Wold BJ, Quake SR, Brody JP, "Identification and Confirmation of a Module of Coexpressed Genes", Genome Research 12: 1517-1522 (2002). pdf
Adams M, DeRose G, Quake SR, Scherer A. "Fundamental approach for optoelectronic and microfluidic integration for miniaturizing spectroscopic devices", Proceedings of SPIE Vol. 4647 1-6 (2002).pdf
Eyal S and Quake SR, "Velocity Independent Microfluidic Flow Cytometry", Electrophoresis 23: 2653-2657 (2002). pdf
Liu J, Enzelberger M, Quake SR, "A Nanoliter Rotary Device for Polymerase Chain Reaction", Electrophoresis 23: 1531-1536 (2002). pdf
Fu AY, Chou HP, Spence C, Arnold FH, Quake SR, "An Integrated Microfabricated Cell Sorter", Anal. Chem. (2002). pdf
Van Dam RM, Quake SR, "Gene Expression Analysis with Universal n-mer Arrays", Genome Research 12: 145-152 (2002). pdf
Chou HP, Unger MA, Quake SR, "A Microfabricated Rotary Pump", Biomedical Microdevices 3: 323-330 (2001). pdf
Thorsen T, Roberts RW, Arnold FH, Quake SR, "Dynamic Pattern Formation in a Vesicle-Generating Microfluidic Device", Phys. Rev. Lett. 86: 4163-6 (2001). pdf
Chiu CS, Kartalov E, Unger MA, Quake SR, Lester H, "Single molecule measurements calibrate green fluorescent protein surface densities on transparent beads for use in "knock-in" animals and other expression systems", Journal of Neuroscience Methods 105: 55-63 (2001). pdf
Quake SR and Scherer A, "From Micro to Nano Fabrication with Soft Materials", Science 290: 1536-40 (2000). pdf
Chou HP, Unger MA, Scherer A, Quake SR, "Integrated Elastomer Fluidic Lab on a Chip - Surface Patterning and DNA diagnostics", in Proceedings of the Solid State Actuator and Sensor Workshop , Hilton Head, S.C. (2000). pdf
Meiners JC, Quake SR, "FemtoNewton Force Spectroscopy of Single Extended DNA Molecules", Phys. Rev. Lett. 84: 5014-7 (2000). pdf
Quake SR, Yang TJ, Lessard GA, Unger A, Kartalov E, "Fluorescence apertureless near-field microscope: a step towards imaging information in DNA", Proceedings of SPIE Vol. 3922 199-204 (2000). pdf
Unger MA, Chou HP, Thorsen T, Scherer A, Quake SR, "Monolithic Microfabricated Valves and Pumps by Multilayer Soft Lithography", Science 288: 113-116 (2000). pdf
Yang TJ, Lessard GA, Quake SR, "An Apertureless Near-Field Microscope for Fluorescence Imaging", Applied Physics Letters 76: 378-380 (2000). pdf
Unger MA, Kartalov E, Chiu CS, Lester H, Quake SR, "Single Molecule Fluorescence Observed with Mercury Lamp Illumination", Biotechniques 27: 1008-1013 (1999). pdf
Fu AY, Spence C, Scherer A, Arnold FH, Quake SR, "A Microfabricated Fluorescence-Activated Cell Sorter", Nature Biotechnology 17: 1109-1111 (1999).pdf
Hatfield JW and Quake SR, "Dynamic Properties of an Extended Polymer in Solution", Phys Rev Lett 82: 3548-51 (1999).pdf
Lessard G, Yang TJ, Barritault P, Quake SR, "A Scanning Apertureless Fluorescence Microscope", Proceedings of the SPIE, Vol. 3607 158-165 (1999) pdf
Meiners JC and Quake SR, "A Direct Measurement of Hydrodynamic Cross Correlations Between Two Particles in an External Potential", Phys Rev Lett 82: 2211-2214 (1999). pdf
Brody JP and Quake SR, "A Self-Assembled Microlensing Rotational Probe", Appl Phys Lett. volume 74, no. 1, 4 January 1999. pdf
Chou HP, Spence C, Scherer A, Quake SR, "A Microfabricated Device for Sizing and Sorting DNA Molecules", Proc. Nat'l Acad. Sci. 96: 11-13 (1999). pdf
Quake SR, Chou HP, Spence C, Fu AY, Scherer A, "Disposable Microdevices for DNA Analysis and Cell Sorting", Proc. Solid-State Sensor and Actuator Workshop , Hilton Head, SC, June 8-11, 1998, pp.11-14. pdf
Chou HP, Spence C, Scherer A, Quake SR, "Microfabricated devices for sizing DNA and sorting cells," in Micro- and Nanofabricated Structures and Devices for Biomedical Environmental Applications , Paul L. Gourley, Editor, Proceedings of SPIE Vol 3258, 181-7, (1998). pdf
Quake SR, Babcock H, Chu S, "The dynamics of partially extended single molecules of DNA", Nature 388 : 151-154 (1997).pdf
Quake SR. "Fast Monte Carlo algorithms for knotted polymers" Phys. Rev. E Stat. Phys. Plasmas Fluids Relat. Interdiscip. Topics. 1995 Jul; 52(1):1176-1180. pdf
Quake SR. "Topological effects of knots in polymers" Phys. Rev. Lett. 1994 Dec 12; 73(24): 3317-3320. pdf
Quake SR. "The Zimm model applied to extended single polymers" J. Chem Phys. 1994 Sept. 101 (5); 4307-4311 pdf
Perkins TT, Quake SR, Smith DE, Chu S. "Relaxation of a single DNA molecule observed by optical microscopy" Science. 1994 May 6; 264(5160):822-6. pdf


Applied Physics | Bioengineering | Biological Sciences | Bio-X | Engineering | Medicine | Physics
Stanford University

Copyright© 2005 Stanford University. All Rights Reserved.